Welcome!
FIMM Single-Cell Analytics (SCA) unit develops and provides open-access single-cell transcriptomics and genomics services nationally and internationally. Our unit collaborates closely with the FIMM Genomics Sequencing unit as well as with the FIMM Technology Centre IT Services, Digital Microscopy and Molecular Pathology unit and FIMM HiPREP unit.
Sign in to browse Single-Cell Analytics services and to submit a service request.
FIMM Single-Cell Analytics is a non-profit academic core facility. We are part of HILIFE and Biocenter Finland Single-Cell omics networks.
Preferred way to login to FIMM Single-Cell Analytics Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.
When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.
Jenni Lahtela
Head of Unit
Jenni Lahtela, Head of Unit, Tel: +358 50 319 8725, E-mail: jenni.lahtela@helsinki.fi
Emma Saarinen, NGS Expert, Tel: +358 50 3185062, E-mail: emma.a.saarinen@helsinki.fi
Janika Sirjala, Single Cell Laboratory Coordinator, Tel: +358 50 4799276, E-mail: janika.sirjala@helsinki.fi
Salla Hyyppä, Single Cell Laboratory Coordinator, Tel: +358 50 4489495, E-mail: salla.hyyppa@helsinki.fi
Simona Bramante, Spatial Transcriptomics Laboratory Coordinator, Tel: +358 50 3207268, E-mail: simona.bramante@helsinki.fi
Marika Kuisma-van der Linden, Spatial Transcriptomics Laboratory Coordinator, Tel: +358 50 3150168, E-mail: marika.kuisma@helsinki.fi
Bishwa Ghimire, Bioinformatician, Tel: +358 50 3112564, E-mail: bishwa.ghimire@helsinki.fi
| Hours | Location |
|
Monday-Friday |
Biomedicum Helsinki 2U |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Jenni Lahtela |
Unit Head
|
+358 50 319 8725
|
jenni.lahtela@helsinki.fi
|
| Browse available services (read only) |
| ► 10X Genomics Chromium services (27) | |||
| Name | Description | Price | |
|---|---|---|---|
| Chromium Fixed RNA Profiling Library Prep for 16-plexed Samples | |||
| Chromium GEM-X Flex Gene Expression 16-plex Library Prep | Inquire | ||
| Chromium GEM-X Flex Gene Expression 4-plex Library Prep | Inquire | ||
| Chromium GEM-X Flex Gene Expression Singleplex Library Prep | Inquire | ||
| Chromium GEM-X Flex Sample Preparation v2 kit | Inquire | ||
| Chromium GEM-X Single Cell 3' Gene Expression v4 Library Prep | Inquire | ||
| Chromium GEM-X Single Cell 3’ Feature Barcoding v4 Library Prep | Inquire | ||
| Chromium GEM-X Single Cell 5' Gene Expression v3 Library Prep | Inquire | ||
| Chromium GEM-X Single Cell 5’ Feature Barcoding v3 Library Prep | Inquire | ||
| Chromium GEM-X Single Cell V(D)J Enriched v3 Library Prep | Inquire | ||
| Chromium GEM-X Universal 3' Gene Expression v4 4-plex Libray Prep | Inquire | ||
| Chromium GEM-X Universal 5' Gene Expression v3 4-plex Libray Prep | Inquire | ||
| Chromium Next GEM Single Cell 3' Gene Expression v3.1 Library Prep | Inquire | ||
| Chromium Next GEM Single Cell 5' Gene Expression v2 Library Prep | Inquire | ||
| Chromium Next GEM Single Cell Multiome ATAC + GEX Library Prep | Inquire | ||
| Chromium Next GEM Single Cell V(D)J Enriched v2 Library Prep | Inquire | ||
| Chromium Run | Inquire | ||
| Chromium run and Chromium GEM-X 3' Chip | Inquire | ||
| Chromium run and Chromium GEM-X 5' Chip | Inquire | ||
| Chromium run and Chromium Next GEM Chip G | Inquire | ||
| Chromium run and Chromium Next GEM Chip H | Inquire | ||
| Chromium run and Chromium Next GEM Chip J | Inquire | ||
| Chromium run and Chromium Next GEM Chip K | Inquire | ||
| Chromium run and GEM-X Flex Gene Expression Chip | Inquire | ||
| Chromium run and GEM-X OCM 3' Chip | Inquire | ||
| Chromium run and GEM-X OCM 5' Chip | Inquire | ||
| Chromium Single Cell 5’ CRISPR Screening Library Prep | Inquire | ||
| ► 10X Genomics Visium services (5) | |||
| Name | Description | Price | |
| Visium Spatial Gene Expression 11mm v2 Library Prep (1 slide, 2 samples) | Inquire | ||
| Visium Spatial Gene Expression HD 3' 6.5mm Library Prep (1 slide, 2 samples) | Inquire | ||
| Visium Spatial Gene Expression HD 6.5mm Library Prep (1 slide, 2 samples) | Inquire | ||
| Visium Spatial Gene Expression Library Prep (1 slide, 4 samples) | Inquire | ||
| Visium Spatial Tissue Optimization | Inquire | ||
| ► Custom services (4) | |||
| Name | Description | Price | |
| ADT-Library Prep |
Sequencing library prepared from oligo conjugated antibody tag cDNA Cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq) Stoeckius et al. 2017 Nature Methods |
Inquire | |
| CROP-seq Library Prep |
CRISPR droplet sequencing (CROP-seq) |
Inquire | |
| HTO-Library Prep |
Sequencing library prepared from oligo conjugated antibody tag cDNA Cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq) Stoeckius et al. 2017 Nature Methods Stoeckius et al. 2018 Genome Biology |
Inquire | |
| Tissue Sectioning | Inquire | ||
| ► Mission Bio Tapestri services (1) | |||
| Name | Description | Price | |
| Tapestri Single-Cell DNA Library Prep | Inquire | ||
| ► SCA Data Analysis Services (1) | |||
| Name | Description | Price | |
| Single-cell Analytics Bioinformatics services | Inquire | ||
| Name | Price | |
|---|---|---|
| FIMM SCA Chromium Single-Cell Analysis Reservation | View calendar | |
| FIMM SCA Tapestri Single-Cell Analysis Reservation | View calendar | |
