Welcome!
FIMM Single-Cell Analytics (SCA) unit develops and provides open-access single-cell transcriptomics and genomics services nationally and internationally. Our unit collaborates closely with the FIMM Genomics Sequencing unit as well as with the FIMM Technology Centre IT Services, Digital Microscopy and Molecular Pathology unit and FIMM HiPREP unit.
Sign in to browse Single-Cell Analytics services and to submit a service request.
FIMM Single-Cell Analytics is a non-profit academic core facility. We are part of HILIFE and Biocenter Finland Single-Cell omics networks.
Preferred way to login to FIMM Single-Cell Analytics Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.
When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.
Pirkko Mattila
Head of Unit
Pirkko Mattila, Head of Unit, Tel: +358 50 317 5434, E-mail: pirkko.mattila@helsinki.fi
Jenni Lahtela, Single Cell Project Coordinator, Tel: +358 50 319 8725, E-mail: jenni.lahtela@helsinki.fi
Anna Näätänen, Single Cell Laboratory Coordinator, Tel: +358 50 5188196, E-mail: anna.naatanen@helsinki.fi
Janika Sirjala, Single Cell Laboratory Coordinator, Tel: +358 50 4799276, E-mail: janika.sirjala@helsinki.fi
Emma Saarinen, NGS Expert, Tel: +358 50 3185062, E-mail: emma.a.saarinen@helsinki.fi
Anette Holmström, Spatial Transcriptomics Laboratory Coordinator, Tel: +358 50 4787860, E-mail: anette.holmstrom@helsinki.fi
Bishwa Ghimire, Bioinformatician, Tel: +358 50 3112564, E-mail: bishwa.ghimire@helsinki.fi
| Hours | Location |
|
Monday-Friday |
Biomedicum Helsinki 2U |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Pirkko Mattila |
Head of Unit
|
+358 50 317 5434
|
pirkko.mattila@helsinki.fi
|
|
| Jenni Lahtela |
Single Cell Project Coordinator
|
+358 50 319 8725
|
jenni.lahtela@helsinki.fi
|
| Browse available services (read only) |
| ► 10X Genomics Chromium services (13) | |||
| Name | Description | Price | |
|---|---|---|---|
| Automated Chromium run and Next GEM Chip G | Inquire | ||
| Chromium Fixed RNA Profiling Library Prep for 4-plexed Samples | Inquire | ||
| Chromium Next GEM Automated Single Cell 3ʹ Library v3.1 | Inquire | ||
| Chromium Next GEM Single Cell 3' Gene Expression v3.1 Library Prep | Inquire | ||
| Chromium Next GEM Single Cell 5' Gene Expression v2 Library Prep | Inquire | ||
| Chromium Next GEM Single Cell Multiome ATAC + GEX Library Prep | Inquire | ||
| Chromium Next GEM Single Cell V(D)J Enriched v2 Library Prep | Inquire | ||
| Chromium Run | Inquire | ||
| Chromium run and Chromium Next GEM Chip G | Inquire | ||
| Chromium run and Chromium Next GEM Chip H | Inquire | ||
| Chromium run and Chromium Next GEM Chip J | Inquire | ||
| Chromium run and Chromium Next GEM Chip K | Inquire | ||
| Chromium Single Cell 5’ CRISPR Screening Library Prep | Inquire | ||
| ► 10X Genomics Visium services (3) | |||
| Name | Description | Price | |
| Visium Spatial for FFPE Gene Expression Library Prep, H (1 slide, 4 samples) | Inquire | ||
| Visium Spatial Gene Expression Library Prep (1 slide, 4 samples) | Inquire | ||
| Visium Spatial Tissue Optimization | Inquire | ||
| ► Custom services (2) | |||
| Name | Description | Price | |
| ADT- and HTO-Library Prep |
Sequencing library prepared from oligo conjugated antibody tag cDNA Cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq) Stoeckius et al. 2017 Nature Methods Stoeckius et al. 2018 Genome Biology |
Inquire | |
| CROP-seq Library Prep |
CRISPR droplet sequencing (CROP-seq) |
Inquire | |
| ► Mission Bio Tapestri services (3) | |||
| Name | Description | Price | |
| Tapestri Single-Cell DNA Hematology Panel | Inquire | ||
| Tapestri Single-Cell DNA Library Prep | Inquire | ||
| Tapestri Single-Cell DNA Solid Tumor Panel | Inquire | ||
| ► SCA Data Analysis Services (1) | |||
| Name | Description | Price | |
| Single-cell Analytics Bioinformatics services | Inquire | ||
| ► cellenONE services (1) | |||
| Name | Description | Price | |
| cellenONE single-cell dispensing | Inquire | ||
| Name | Price | |
|---|---|---|
| FIMM SCA cellenONE Single-Cell dispensing Reservation | View calendar | |
| FIMM SCA Chromium Single-Cell Analysis Reservation | View calendar | |
| FIMM SCA Tapestri Single-Cell Analysis Reservation | View calendar | |
