FIMM Genomics Sequencing

Location and hours of operation

Hours

Location

Monday - Friday

9:00h - 16:00h

Biomedicum Helsinki 2

Tukholmankatu 8, Meilahti campus

Helsinki, Finland

Overview of Services

FIMM Genomics provides open-access DNA and RNA sequencing and genotyping services for scientific community in Finland and abroad. Our primary focus is in medical genomics and transcriptomics. Most of our services include primary analysis of the data.

We will help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is implementing novel technologies and assays to match your needs. Our goal is provide state-of-the-art DNA sequencing services for the scientific community in Finland and abroad. Our services rely on experienced expert staff and market-leading NGS platforms NovaSeq6000 and MiSeq personal sequencer. These platforms enable a wide range of sequencing applications from massive genome scale analysis to rapid targeted experiments of selected genomic regions.

FIMM Genomics Sequencing services

FIMM Genomics Genotyping services

To access targeted and genome-wide genotyping services see Genotyping Unit website.

FIMM Genomics is a non-profit academic core facility. We are part of HILIFE Genome Analysis Infrastructure and a member of Biocenter Finland Genome-wide methods network. FIMM is a member of EU-LIFE alliance.

Login Credentials

HAKA federated authentication.

Preferred way to login to FIMM Genomic Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.

iLAB user account

When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.

Contacts

Sari Hannula, NGS Project Manager Email: sari.hannula@helsinki.fi	Aino Palva, NGS Service Expert Email: aino.palva@helsinki.fi
Pirkko Mattila, NGS transcriptomics & Head of Single Cell Analytics Email: pirkko.mattila@helsinki.fi	Tiina Hannunen, Amplicon Services Manager Email: tiina.hannunen@helsinki.fi
Emma Saarinen, Single Cell Analytics Service Expert Email: emma.a.saarinen@helsinki.fi	Minna Tuominen, Capillary sequencing services Email: minna.m.tuominen@helsinki.fi

Links and Resources

Contacts

Name	Role	Phone	Email	Location
Sari Hannula	NGS Project Manager		sari.hannula@helsinki.fi	Biomedicum 2U FIMM

Browse available services

Name	Description	Price
Accel 1S Plus Library Prep		Inquire
Accel Methyl-Seq, UDI indexes		Inquire
BluePippin DNA size selection, 1 chip		UH Internal €290.30 each External Academic €335.00 each
dsDNA quantification max 88samples		Inquire
FINWES Capture	Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture.	UH Internal €2,261.14 each External Academic €2,604.73 each
Fragment analysis run, ABI 3730xl	Service includes Electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries Initial electrophoresis run quality assessment Result files (chromatograms, .fsa format) Customer provides Full 96 well plate ready for electrophoresis (PCR + Hi-Di + size standard). Each well must contain at least Hi-Di formamide.* Use only ABI 96-well Optical reaction plates with barcodes (PN 4306737). Fragment analysis plate delivered to SeqLab fridge or by mail / courier	Inquire
Full service series, Sanger seq	Service includes BigDye v.3.1 sequencing reaction for customer's template-primer cocktails. Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Electrophoresis with ABI3730xl DNA Analyzer. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides DNA template-primer cocktails on V-bottomed PCR-plates delivered to SeqLab fridge or by mail / courier. Full service series service category is for full 96-well plates only. For smaller batches use 'Full service single' service category.	Inquire
Illumina DNA PCR-free	Library prep kit for human WGS	Inquire
Illumina DNA prep (Nextera Flex Library Prep) HT 1/4 rxn	Illumina DNA Prep Tagmentation, >48 samples	Inquire
Illumina DNA prep (Nextera) 1/4 for 96 samples		UH Internal €5,847.93 each External Academic €6,807.70 each
Illumina Stranded mRNA		UH Internal €134.69 each External Academic €155.97 each
Illumina Stranded Total RNA Prep		UH Internal €186.03 each External Academic €215.01 each
LabChip GX Genomic analysis, 24 samples		UH Internal €230.96 each External Academic €266.76 each
LabChip GX Hisens analysis, 48 samples		UH Internal €271.85 each External Academic €313.78 each
Lexogen small RNA -Seq		UH Internal €244.63 each External Academic €282.40 each
Library Quantification qPCR		UH Internal €567.08 each External Academic €653.30 each
MiSeq Micro 300 run		UH Internal €1,461.78 each External Academic €1,693.22 each
MiSeq Nano 300 run		UH Internal €1,272.42 each External Academic €1,475.46 each
MiSeq Nano 500 run		UH Internal €1,346.50 each External Academic €1,560.65 each
MiSeq PE150 v2 run		UH Internal €2,238.30 each External Academic €2,586.22 each
MiSeq PE250 v2 run		UH Internal €2,406.70 each External Academic €2,779.88 each
MiSeq PE300 v3 run		UH Internal €2,861.30 each External Academic €3,302.67 each
MiSeq PE75 v3 run		UH Internal €2,060.82 each External Academic €2,382.12 each
MiSeq SE50 v2 run		UH Internal €1,943.64 each External Academic €2,247.36 each
NEBNext Enzymatic Methyl-seq Library prep	Library preparation using NEBNext Enzymatic Methyl-seq kit	UH Internal €190.50 each External Academic €221.23 each
NEBNext Ultra II Library Prep 1/4 for 96 samples	Library preparation using NEBNEext Ultra II Library Prep kit	UH Internal €7,584.00 each External Academic €8,824.81 each
Normalization of concentration / plate		UH Internal €603.93 each External Academic €698.00 each
NovaSeq S1 NS1-100 run	v1.5 chemistry kit Estimated run yield 134-167 Gb / 1300-1600 M PF Clusters	UH Internal €5,793.27 each External Academic €6,679.03 each
NovaSeq S1 NS1-200 run	v1.5 chemistry kit Estimated run yield 266-333 Gb / 1300-1600 M PF Clusters	UH Internal €7,009.67 each External Academic €8,077.89 each
NovaSeq S1 NS1-300 run	v1.5 chemistry kit Estimated run yield 400-500 Gb / 1300-1600 M PF Clusters	UH Internal €7,535.47 each External Academic €8,682.56 each
NovaSeq S2 NS2-100 run	v1.5 chemistry kit Estimated run yield 333-417 Gb / 3300-4100 M PF Clusters	UH Internal €9,794.27 each External Academic €11,280.18 each
NovaSeq S2 NS2-200 run	v1.5 chemistry kit Estimated run yield 667-833 Gb / 3300-4100 M PF Clusters	UH Internal €11,968.67 each External Academic €13,780.74 each
NovaSeq S2 NS2-300 run	v1.5 chemistry kit Estimated run yield 1000-1250 Gb / 3300-4100 M PF Clusters	UH Internal €12,823.47 each External Academic €14,763.76 each
NovaSeq S4 NS4-200 run	v1.5 chemistry kit Estimated run yield 1600-2000 Gb / 8000-10000 M PF Clusters	UH Internal €16,528.47 each External Academic €19,024.51 each
NovaSeq S4 NS4-300 run	v1.5 chemistry kit Estimated run yield 2400-3000 Gb / 8000-10000 M PF Clusters	UH Internal €18,572.47 each External Academic €21,375.11 each
NovaSeq S4 NS4-35 run	v1.5 chemistry kit Estimated run yield 280-350 Gb / 8000-10000 M PF Clusters	UH Internal €12,603.47 each External Academic €14,510.76 each
NovaSeq SP NSP-100 run	v1.5 chemistry kit Estimated run yield 65-80 Gb / 650-800 M PF Clusters	UH Internal €3,751.47 each External Academic €4,330.96 each
NovaSeq SP NSP-200 run	v1.5 chemistry kit Estimated run yield 134-167 Gb / 650-800 M PF Clusters	UH Internal €4,533.27 each External Academic €5,230.03 each
NovaSeq SP NSP-300 run	v1.5 chemistry kit Estimated run yield 200-250 Gb / 650-800 M PF Clusters	UH Internal €4,852.47 each External Academic €5,597.11 each
NovaSeq SP NSP-500 run	v1.5 chemistry kit Run yield estimation 325-400 Gb / 650-800 M PF Clusters	UH Internal €6,288.47 each External Academic €7,248.51 each
NovaSeq XP 2-Lane Kit Divider	v1.5 chemistry kit Can be used in SP/S1/S2 flow cells	UH Internal €343.00 each External Academic €394.45 each
NovaSeq Xp 4-Lane Kit Divider	v1.5 chemistry kit Can be used in S4 flow cell	UH Internal €687.00 each External Academic €790.05 each
Pan Cancer Capture		UH Internal €1,215.14 each External Academic €1,401.83 each
PCR Amplicon setup	Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS.	UH Internal €47.72 each
PCR amplification, series	Sample batches of >8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service.	Inquire
PCR amplification, singles	Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service	Inquire
QIAseq cfDNA Library Prep		Inquire
QuantSeq 3'-mRNA Seq Library Prep, 48 samples		UH Internal €6,155.58 each External Academic €7,130.52 each
Ready-to-run reaction, Sanger seq	Service includes Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Capillary electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides Ready made sequencing reactions (10µl) in a 96-well plate format.	Inquire
RNA Quality Control Bioanalyzer, 12 samples		UH Internal €215.63 each External Academic €249.13 each
RNA Quality Control Caliper GX, 48 samples		UH Internal €277.90 each External Academic €320.74 each
SMART-Seq Ultra Low RNA Library Prep		UH Internal €207.41 each External Academic €239.59 each
Twist Comprehensive Exome Capture	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Custom Capture (no probes)		UH Internal €461.47 each External Academic €535.12 each
Twist Exome 2.0 plus Comp Exome spike-in Capture	37Mb target	UH Internal €883.46 each External Academic €1,020.40 each
Twist Fast Hyb Alliance Pan-Cancer Methylation Capture	Fast Hyb Alliance Pan-Cancer Methylation Capture of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction.	UH Internal €1,001.20 each External Academic €1,155.80 each
Twist Fast Hyb Custom Capture (no probes)	Target enrichment of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction.	UH Internal €479.14 each External Academic €555.44 each
Twist Library Prep for 96 samples	Library preparation using Twist Library Preparation EF Kit 2.0	UH Internal €9,097.49 each External Academic €10,565.32 each
Twist Library Prep, UDI indexes		UH Internal €134.97 each External Academic €156.83 each

Search available services: View: by category alphabetically

Name	Description	Price
▼ ► Preprocessing (8)
BluePippin DNA size selection, 1 chip		UH Internal €290.30 each External Academic €335.00 each
dsDNA quantification max 88samples		Inquire
LabChip GX Genomic analysis, 24 samples		UH Internal €230.96 each External Academic €266.76 each
LabChip GX Hisens analysis, 48 samples		UH Internal €271.85 each External Academic €313.78 each
Library Quantification qPCR		UH Internal €567.08 each External Academic €653.30 each
Normalization of concentration / plate		UH Internal €603.93 each External Academic €698.00 each
RNA Quality Control Bioanalyzer, 12 samples		UH Internal €215.63 each External Academic €249.13 each
RNA Quality Control Caliper GX, 48 samples		UH Internal €277.90 each External Academic €320.74 each
▼ ► NGS Genome Analysis (20)
Name	Description	Price
Accel 1S Plus Library Prep		Inquire
Accel Methyl-Seq, UDI indexes		Inquire
FINWES Capture	Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture.	UH Internal €2,261.14 each External Academic €2,604.73 each
Illumina DNA PCR-free	Library prep kit for human WGS	Inquire
Illumina DNA prep (Nextera Flex Library Prep) HT 1/4 rxn	Illumina DNA Prep Tagmentation, >48 samples	Inquire
Illumina DNA prep (Nextera) 1/4 for 96 samples		UH Internal €5,847.93 each External Academic €6,807.70 each
NEBNext Enzymatic Methyl-seq Library prep	Library preparation using NEBNext Enzymatic Methyl-seq kit	UH Internal €190.50 each External Academic €221.23 each
NEBNext Ultra II Library Prep 1/4 for 96 samples	Library preparation using NEBNEext Ultra II Library Prep kit	UH Internal €7,584.00 each External Academic €8,824.81 each
Pan Cancer Capture		UH Internal €1,215.14 each External Academic €1,401.83 each
PCR Amplicon setup	Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS.	UH Internal €47.72 each
PCR amplification, series	Sample batches of >8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service.	Inquire
PCR amplification, singles	Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service	Inquire
QIAseq cfDNA Library Prep		Inquire
Twist Comprehensive Exome Capture	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Custom Capture (no probes)		UH Internal €461.47 each External Academic €535.12 each
Twist Exome 2.0 plus Comp Exome spike-in Capture	37Mb target	UH Internal €883.46 each External Academic €1,020.40 each
Twist Fast Hyb Alliance Pan-Cancer Methylation Capture	Fast Hyb Alliance Pan-Cancer Methylation Capture of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction.	UH Internal €1,001.20 each External Academic €1,155.80 each
Twist Fast Hyb Custom Capture (no probes)	Target enrichment of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction.	UH Internal €479.14 each External Academic €555.44 each
Twist Library Prep for 96 samples	Library preparation using Twist Library Preparation EF Kit 2.0	UH Internal €9,097.49 each External Academic €10,565.32 each
Twist Library Prep, UDI indexes		UH Internal €134.97 each External Academic €156.83 each
▼ ► NGS Transcriptome Analysis (5)
Name	Description	Price
Illumina Stranded mRNA		UH Internal €134.69 each External Academic €155.97 each
Illumina Stranded Total RNA Prep		UH Internal €186.03 each External Academic €215.01 each
Lexogen small RNA -Seq		UH Internal €244.63 each External Academic €282.40 each
QuantSeq 3'-mRNA Seq Library Prep, 48 samples		UH Internal €6,155.58 each External Academic €7,130.52 each
SMART-Seq Ultra Low RNA Library Prep		UH Internal €207.41 each External Academic €239.59 each
▼ ► Illumina sequencing (FIMM) (23)
Name	Description	Price
MiSeq Micro 300 run		UH Internal €1,461.78 each External Academic €1,693.22 each
MiSeq Nano 300 run		UH Internal €1,272.42 each External Academic €1,475.46 each
MiSeq Nano 500 run		UH Internal €1,346.50 each External Academic €1,560.65 each
MiSeq PE150 v2 run		UH Internal €2,238.30 each External Academic €2,586.22 each
MiSeq PE250 v2 run		UH Internal €2,406.70 each External Academic €2,779.88 each
MiSeq PE300 v3 run		UH Internal €2,861.30 each External Academic €3,302.67 each
MiSeq PE75 v3 run		UH Internal €2,060.82 each External Academic €2,382.12 each
MiSeq SE50 v2 run		UH Internal €1,943.64 each External Academic €2,247.36 each
NovaSeq S1 NS1-100 run	v1.5 chemistry kit Estimated run yield 134-167 Gb / 1300-1600 M PF Clusters	UH Internal €5,793.27 each External Academic €6,679.03 each
NovaSeq S1 NS1-200 run	v1.5 chemistry kit Estimated run yield 266-333 Gb / 1300-1600 M PF Clusters	UH Internal €7,009.67 each External Academic €8,077.89 each
NovaSeq S1 NS1-300 run	v1.5 chemistry kit Estimated run yield 400-500 Gb / 1300-1600 M PF Clusters	UH Internal €7,535.47 each External Academic €8,682.56 each
NovaSeq S2 NS2-100 run	v1.5 chemistry kit Estimated run yield 333-417 Gb / 3300-4100 M PF Clusters	UH Internal €9,794.27 each External Academic €11,280.18 each
NovaSeq S2 NS2-200 run	v1.5 chemistry kit Estimated run yield 667-833 Gb / 3300-4100 M PF Clusters	UH Internal €11,968.67 each External Academic €13,780.74 each
NovaSeq S2 NS2-300 run	v1.5 chemistry kit Estimated run yield 1000-1250 Gb / 3300-4100 M PF Clusters	UH Internal €12,823.47 each External Academic €14,763.76 each
NovaSeq S4 NS4-200 run	v1.5 chemistry kit Estimated run yield 1600-2000 Gb / 8000-10000 M PF Clusters	UH Internal €16,528.47 each External Academic €19,024.51 each
NovaSeq S4 NS4-300 run	v1.5 chemistry kit Estimated run yield 2400-3000 Gb / 8000-10000 M PF Clusters	UH Internal €18,572.47 each External Academic €21,375.11 each
NovaSeq S4 NS4-35 run	v1.5 chemistry kit Estimated run yield 280-350 Gb / 8000-10000 M PF Clusters	UH Internal €12,603.47 each External Academic €14,510.76 each
NovaSeq SP NSP-100 run	v1.5 chemistry kit Estimated run yield 65-80 Gb / 650-800 M PF Clusters	UH Internal €3,751.47 each External Academic €4,330.96 each
NovaSeq SP NSP-200 run	v1.5 chemistry kit Estimated run yield 134-167 Gb / 650-800 M PF Clusters	UH Internal €4,533.27 each External Academic €5,230.03 each
NovaSeq SP NSP-300 run	v1.5 chemistry kit Estimated run yield 200-250 Gb / 650-800 M PF Clusters	UH Internal €4,852.47 each External Academic €5,597.11 each
NovaSeq SP NSP-500 run	v1.5 chemistry kit Run yield estimation 325-400 Gb / 650-800 M PF Clusters	UH Internal €6,288.47 each External Academic €7,248.51 each
NovaSeq XP 2-Lane Kit Divider	v1.5 chemistry kit Can be used in SP/S1/S2 flow cells	UH Internal €343.00 each External Academic €394.45 each
NovaSeq Xp 4-Lane Kit Divider	v1.5 chemistry kit Can be used in S4 flow cell	UH Internal €687.00 each External Academic €790.05 each
▼ ► ABI3730xl assays (3)
Name	Description	Price
Fragment analysis run, ABI 3730xl	Service includes Electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries Initial electrophoresis run quality assessment Result files (chromatograms, .fsa format) Customer provides Full 96 well plate ready for electrophoresis (PCR + Hi-Di + size standard). Each well must contain at least Hi-Di formamide.* Use only ABI 96-well Optical reaction plates with barcodes (PN 4306737). Fragment analysis plate delivered to SeqLab fridge or by mail / courier	Inquire
Full service series, Sanger seq	Service includes BigDye v.3.1 sequencing reaction for customer's template-primer cocktails. Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Electrophoresis with ABI3730xl DNA Analyzer. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides DNA template-primer cocktails on V-bottomed PCR-plates delivered to SeqLab fridge or by mail / courier. Full service series service category is for full 96-well plates only. For smaller batches use 'Full service single' service category.	Inquire
Ready-to-run reaction, Sanger seq	Service includes Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Capillary electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides Ready made sequencing reactions (10µl) in a 96-well plate format.	Inquire

FIMM Genomics Sequencing

Location and hours of operation

Overview of Services

FIMM Genomics Sequencing services

FIMM Genomics Genotyping services

Login Credentials

HAKA federated authentication.

iLAB user account

Contacts

Links and Resources

Contacts

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

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