FIMM Genomics

Location and hours of operation

Hours

Location

Monday - Friday

9:00h - 16:00h

Biomedicum Helsinki 2

Tukholmankatu 8, Meilahti campus

Helsinki, Finland

Overview of Services

FIMM Genomics provides open-access DNA and RNA sequencing and genotyping services for scientific community in Finland and abroad. Our primary focus is in medical genomics and transcriptomics. Most of our services include primary analysis of the data.

We will help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is implementing novel technologies and assays to match your needs. Our goal is provide state-of-the-art DNA sequencing services for the scientific community in Finland and abroad. Our services rely on experienced expert staff and market-leading NGS platforms NovaSeq6000 and MiSeq personal sequencer. These platforms enable a wide range of sequencing applications from massive genome scale analysis to rapid targeted experiments of selected genomic regions.

FIMM Genomics Sequencing services

FIMM Genomics Genotyping services

To access targeted and genome-wide genotyping services see Genotyping Unit website.

FIMM Genomics is a non-profit academic core facility. We are part of HILIFE Genome Analysis Infrastructure and a member of Biocenter Finland Genome-wide methods network. FIMM is a member of EU-LIFE alliance.

Aiheeseen liittyvä kuva

Login Credentials

HAKA federated authentication.

Preferred way to login to FIMM Genomic Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.

iLAB user account

When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.

Contacts

Pekka Ellonen, Head of Sequencing laboratory Email: pekka.ellonen@helsinki.fi	Sari Hannula, NGS Project Manager Email: sari.hannula@helsinki.fi
Pirkko Mattila, NGS transcriptomics & Head of single cell analytics Email: pirkko.mattila@helsinki.fi	Harri Kangas, NGS Service Expert Email: harri.kangas@helsinki.fi
Jenni Lahtela, Coordinator Single cell analytics Emai: jenni.lahtela@helsinki.fi	Aino Palva, NGS Service Expert Email: aino.palva@helsinki.fi
Emma Saarinen, NGS Service Expert Email: emma.a.saarinen@helsinki.fi	Tiina Hannunen, Amplicon Services Manager Email: tiina.hannunen@helsinki.fi
Anu Suoranta, NGS Service Expert Email: anu.z.suoranta@helsinki.fi	Minna Tuominen, Capillary sequencing services Email: minna.m.tuominen@helsinki.fi

Links and Resources

Contacts

Name	Role	Phone	Email	Location
Pekka Ellonen	Head of Sequencing laboratory	+358504154481	pekka.ellonen@helsinki.fi	Biomedicum 2U FIMM

Browse available services

Name	Description	Price
Accel 1S Plus Library Prep		Inquire
Accel Methyl-Seq, UDI indexes		Inquire
BluePippin DNA size selection, 1 chip		UH Internal €113.24 each External Academic €118.91 each
FINWES Capture	Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture.	UH Internal €1,351.99 each External Academic €1,419.59 each
Fragment analysis run, ABI 3730xl	Service includes Electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries Initial electrophoresis run quality assessment Result files (chromatograms, .fsa format) Customer provides Full 96 well plate ready for electrophoresis (PCR + Hi-Di + size standard). Each well must contain at least Hi-Di formamide.* Use only ABI 96-well Optical reaction plates with barcodes (PN 4306737). Fragment analysis plate delivered to SeqLab fridge or by mail / courier	Inquire
Full service series, Sanger seq	Service includes BigDye v.3.1 sequencing reaction for customer's template-primer cocktails. Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Electrophoresis with ABI3730xl DNA Analyzer. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides DNA template-primer cocktails delivered to SeqLab fridge or by mail / courier >> see Deliver samples. Full 96-well plates only. For smaller batches use 'Full service single' service	Inquire
Illumina DNA PCR-free	Library prep kit for human WGS	Inquire
Illumina DNA prep (Nextera Flex Library Prep) 1/4 rxn	Illumina DNA Prep Tagmentation, <48 samples	Inquire
Illumina DNA prep (Nextera Flex Library Prep) HT 1/4 rxn	Illumina DNA Prep Tagmentation, >48 samples	Inquire
LabChip GX Genomic analysis, 24 samples		UH Internal €100.98 each External Academic €106.03 each
LabChip GX Hisens analysis, 48 samples		UH Internal €98.39 each External Academic €103.31 each
Library Quantification qPCR		UH Internal €392.17 each External Academic €411.78 each
MiSeq (TCR) SE150 v3 run		Inquire
MiSeq Micro 300 run		Inquire
MiSeq Nano 300 run		Inquire
MiSeq Nano 500 run		Inquire
MiSeq PE150 v2 run		Inquire
MiSeq PE250 v2 run		Inquire
MiSeq PE300 v3 run		Inquire
MiSeq PE75 v3 run		Inquire
MiSeq SE50 v2 run		Inquire
NEBNext Ultra II Library Prep	End-repair and ligation according to manufacturer protocol for full 96-well plates. 1/4 reaction. Requires already fragmented DNA.	Inquire
Normalization of concentration / plate		UH Internal €84.92 each External Academic €89.17 each
NovaSeq S1 NS1-100 run	v1.5 chemistry kit Estimated run yield 167 Gb / 1600 M PF Clusters	Inquire
NovaSeq S1 NS1-200 run	v1.5 chemistry kit Estimated run yield 333 Gb / 1600 M PF Clusters	Inquire
NovaSeq S1 NS1-300 run	v1.5 chemistry kit Estimated run yield 500 Gb / 1600 M PF Clusters	Inquire
NovaSeq S2 NS2-100 run	v1.5 chemistry kit Estimated run yield 417 Gb / 4100 M PF Clusters	Inquire
NovaSeq S2 NS2-200 run	v1.5 chemistry kit Estimated run yield 833 Gb / 4100 M PF Clusters	Inquire
NovaSeq S2 NS2-300 run	v1.5 chemistry kit Estimated run yield 1250 Gb / 4100 M PF Clusters	Inquire
NovaSeq S4 NS4-200 run	v1.5 chemistry kit Estimated run yield 2000 Gb / 10000 M PF Clusters	Inquire
NovaSeq S4 NS4-300 run	v1.5 chemistry kit Estimated run yield 3000 Gb / 10000 M PF Clusters	Inquire
NovaSeq S4 NS4-35 run	v1.5 chemistry kit Estimated run yield 350 Gb / 10000 M PF Clusters	Inquire
NovaSeq SP NSP-100 run	v1.5 chemistry kit Estimated run yield 80 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-200 run	v1.5 chemistry kit Estimated run yield 167 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-300 run	v1.5 chemistry kit Estimated run yield 250 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-500 run	v1.5 chemistry kit Run yield estimation 400 Gb / 800 M PF Clusters	Inquire
NovaSeq XP 2-Lane Kit Divider	v1.5 chemistry kit Can be used in SP/S1/S2 flow cells	Inquire
NovaSeq Xp 4-Lane Kit Divider	v1.5 chemistry kit Can be used in S4 flow cell	Inquire
PCR Amplicon setup	Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS.	UH Internal €71.14 each
PCR amplification, series	Sample batches of ≥8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service.	Inquire
PCR amplification, singles	Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service	Inquire
Pan Cancer Capture		UH Internal €810.00 each External Academic €850.00 each
QIAseq cfDNA Library Prep		Inquire
RNA Quality Control Bioanalyzer, 12 samples		UH Internal €81.68 each External Academic €85.76 each
RNA Quality Control Caliper GX, 48 samples		UH Internal €118.42 each External Academic €124.34 each
Ready-to-run reaction, Sanger seq	Service includes Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Capillary electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides Ready made sequencing reactions (10µl) in a 96-well plate format.	Inquire
Twist Comprehensive Exome Capture	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Custom Capture (no probes)		UH Internal €268.90 each External Academic €282.34 each
Twist Library Prep + Comprehensive Exome Capture, 1-plex	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Library Prep + Comprehensive Exome Capture, 8-plex	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Library Prep + FINWES Capture 8-plex	57MB target	Inquire
Twist Library Prep + Pan Cancer Capture 8-plex		Inquire
Twist Library Prep, UDI indexes		UH Internal €89.24 each External Academic €93.70 each
gDNA Ampure XP Purification, batch of 10		UH Internal €56.18 each External Academic €58.99 each

Search available services: View: by category alphabetically

Name	Description	Price
▼ ► Preprocessing (8)
BluePippin DNA size selection, 1 chip		UH Internal €113.24 each External Academic €118.91 each
gDNA Ampure XP Purification, batch of 10		UH Internal €56.18 each External Academic €58.99 each
LabChip GX Genomic analysis, 24 samples		UH Internal €100.98 each External Academic €106.03 each
LabChip GX Hisens analysis, 48 samples		UH Internal €98.39 each External Academic €103.31 each
Library Quantification qPCR		UH Internal €392.17 each External Academic €411.78 each
Normalization of concentration / plate		UH Internal €84.92 each External Academic €89.17 each
RNA Quality Control Bioanalyzer, 12 samples		UH Internal €81.68 each External Academic €85.76 each
RNA Quality Control Caliper GX, 48 samples		UH Internal €118.42 each External Academic €124.34 each
▼ ► NGS Genome Analysis (19)
Name	Description	Price
Accel 1S Plus Library Prep		Inquire
Accel Methyl-Seq, UDI indexes		Inquire
FINWES Capture	Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture.	UH Internal €1,351.99 each External Academic €1,419.59 each
Illumina DNA PCR-free	Library prep kit for human WGS	Inquire
Illumina DNA prep (Nextera Flex Library Prep) 1/4 rxn	Illumina DNA Prep Tagmentation, <48 samples	Inquire
Illumina DNA prep (Nextera Flex Library Prep) HT 1/4 rxn	Illumina DNA Prep Tagmentation, >48 samples	Inquire
NEBNext Ultra II Library Prep	End-repair and ligation according to manufacturer protocol for full 96-well plates. 1/4 reaction. Requires already fragmented DNA.	Inquire
Pan Cancer Capture		UH Internal €810.00 each External Academic €850.00 each
PCR Amplicon setup	Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS.	UH Internal €71.14 each
PCR amplification, series	Sample batches of ≥8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service.	Inquire
PCR amplification, singles	Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service	Inquire
QIAseq cfDNA Library Prep		Inquire
Twist Comprehensive Exome Capture	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Custom Capture (no probes)		UH Internal €268.90 each External Academic €282.34 each
Twist Library Prep + Comprehensive Exome Capture, 1-plex	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Library Prep + Comprehensive Exome Capture, 8-plex	Old name Twist Core Exome + Refseq 37MB target	Inquire
Twist Library Prep + FINWES Capture 8-plex	57MB target	Inquire
Twist Library Prep + Pan Cancer Capture 8-plex		Inquire
Twist Library Prep, UDI indexes		UH Internal €89.24 each External Academic €93.70 each
▼ ► Illumina sequencing (FIMM) (24)
Name	Description	Price
MiSeq (TCR) SE150 v3 run		Inquire
MiSeq Micro 300 run		Inquire
MiSeq Nano 300 run		Inquire
MiSeq Nano 500 run		Inquire
MiSeq PE150 v2 run		Inquire
MiSeq PE250 v2 run		Inquire
MiSeq PE300 v3 run		Inquire
MiSeq PE75 v3 run		Inquire
MiSeq SE50 v2 run		Inquire
NovaSeq S1 NS1-100 run	v1.5 chemistry kit Estimated run yield 167 Gb / 1600 M PF Clusters	Inquire
NovaSeq S1 NS1-200 run	v1.5 chemistry kit Estimated run yield 333 Gb / 1600 M PF Clusters	Inquire
NovaSeq S1 NS1-300 run	v1.5 chemistry kit Estimated run yield 500 Gb / 1600 M PF Clusters	Inquire
NovaSeq S2 NS2-100 run	v1.5 chemistry kit Estimated run yield 417 Gb / 4100 M PF Clusters	Inquire
NovaSeq S2 NS2-200 run	v1.5 chemistry kit Estimated run yield 833 Gb / 4100 M PF Clusters	Inquire
NovaSeq S2 NS2-300 run	v1.5 chemistry kit Estimated run yield 1250 Gb / 4100 M PF Clusters	Inquire
NovaSeq S4 NS4-200 run	v1.5 chemistry kit Estimated run yield 2000 Gb / 10000 M PF Clusters	Inquire
NovaSeq S4 NS4-300 run	v1.5 chemistry kit Estimated run yield 3000 Gb / 10000 M PF Clusters	Inquire
NovaSeq S4 NS4-35 run	v1.5 chemistry kit Estimated run yield 350 Gb / 10000 M PF Clusters	Inquire
NovaSeq SP NSP-100 run	v1.5 chemistry kit Estimated run yield 80 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-200 run	v1.5 chemistry kit Estimated run yield 167 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-300 run	v1.5 chemistry kit Estimated run yield 250 Gb / 800 M PF Clusters	Inquire
NovaSeq SP NSP-500 run	v1.5 chemistry kit Run yield estimation 400 Gb / 800 M PF Clusters	Inquire
NovaSeq XP 2-Lane Kit Divider	v1.5 chemistry kit Can be used in SP/S1/S2 flow cells	Inquire
NovaSeq Xp 4-Lane Kit Divider	v1.5 chemistry kit Can be used in S4 flow cell	Inquire
▼ ► ABI3730xl assays (3)
Name	Description	Price
Fragment analysis run, ABI 3730xl	Service includes Electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries Initial electrophoresis run quality assessment Result files (chromatograms, .fsa format) Customer provides Full 96 well plate ready for electrophoresis (PCR + Hi-Di + size standard). Each well must contain at least Hi-Di formamide.* Use only ABI 96-well Optical reaction plates with barcodes (PN 4306737). Fragment analysis plate delivered to SeqLab fridge or by mail / courier	Inquire
Full service series, Sanger seq	Service includes BigDye v.3.1 sequencing reaction for customer's template-primer cocktails. Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Electrophoresis with ABI3730xl DNA Analyzer. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides DNA template-primer cocktails delivered to SeqLab fridge or by mail / courier >> see Deliver samples. Full 96-well plates only. For smaller batches use 'Full service single' service	Inquire
Ready-to-run reaction, Sanger seq	Service includes Sequencing reaction purification: dye terminator removal with Optima DTR 96-Well filter plates. Capillary electrophoresis with ABI3730xl DNA Analyzer, 36cm capillaries. Basecalling with Sequencing Analysis 5.2 Delivery of chromatogram files (*.ab1) Customer provides Ready made sequencing reactions (10µl) in a 96-well plate format.	Inquire

FIMM Genomics

Location and hours of operation

Overview of Services

FIMM Genomics Sequencing services

FIMM Genomics Genotyping services

Login Credentials

HAKA federated authentication.

iLAB user account

Contacts

Links and Resources

Contacts

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

Service includes

Customer provides

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