Welcome!
FIMM Genomics provides open-access DNA and RNA sequencing and genotyping services for scientific community in Finland and abroad. Our primary focus is in medical genomics and transcriptomics. Most of our services include primary analysis of the data.
We will help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is implementing novel technologies and assays to match your needs. Our goal is provide state-of-the-art DNA sequencing services for the scientific community in Finland and abroad. Our services rely on experienced expert staff and market-leading NGS platforms NovaSeq6000 and MiSeq personal sequencer. These platforms enable a wide range of sequencing applications from massive genome scale analysis to rapid targeted experiments of selected genomic regions.
Sign in to browse NGS services and to submit a service request.
To access targeted and genome-wide genotyping services see Genotyping Unit website.
FIMM Genomics is a non-profit academic core facility. We are part of HILIFE Genome Analysis Infrastructure and a member of Biocenter Finland Genome-wide methods network. FIMM is a member of EU-LIFE alliance.
Preferred way to login to FIMM Genomic Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.
When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.
|
Pekka Ellonen, Head of Sequencing laboratory |
Maija Lepistö, NGS Project Manager Email: maija.h.lepisto@helsinki.fi |
|
Pirkko Mattila, NGS transcriptomics & Head of single cell analytics |
Sari Hannula, NGS Project Manager Email: sari.hannula@helsinki.fi |
| Jenni Lahtela, Coordinator Single cell analytics Emai: jenni.lahtela@helsinki.fi |
Aino Palva, NGS Service Expert Email: aino.palva@helsinki.fi |
| Emma Saarinen, NGS Service Expert Email: emma.a.saarinen@helsinki.fi |
Tiina Hannunen, Amplicon Services Manager Email: tiina.hannunen@helsinki.fi |
| Anu Suoranta, NGS Service Expert Email: anu.z.suoranta@helsinki.fi |
Suvi Kyttänen, Capillary sequencing services Email: suvi.kyttanen@helsinki.fi |
| Harri Kangas, NGS Service Expert Email: harri.kangas@helsinki.fi |
|
| Hours | Location |
|
Monday - Friday 9:00h - 16:00h |
Biomedicum Helsinki 2 Tukholmankatu 8, Meilahti campus Helsinki, Finland |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Pekka Ellonen |
Head of Sequencing laboratory
|
pekka.ellonen@helsinki.fi
|
| Browse available services |
| ► Preprocessing (1) | |||
| Name | Description | Price | |
|---|---|---|---|
| Library Quantification qPCR, up to 40 rxn | Inquire | ||
| ► NGS Genome Analysis (16) | |||
| Name | Description | Price | |
| FINWES Capture |
UH Internal
€1,351.99
each
External Academic €1,419.59 each |
||
| Nextera Flex Library Prep 1/4 rxn | Inquire | ||
| Nextera Flex Library Prep HT 1/4 rxn | Inquire | ||
| NexteraFlexForExome, 12-plex | Inquire | ||
| Pan Cancer Capture |
UH Internal
€810.00
each
External Academic €850.00 each |
||
| PCR Amplicon setup |
Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS. |
UH Internal
€71.14
each
|
|
| PCR amplification, series |
Sample batches of ≥8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service. |
Inquire | |
| PCR amplification, singles |
Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service |
Inquire | |
| QIAseq cfDNA Library Prep | Inquire | ||
| Twist Core Exome + Refseq Capture | Inquire | ||
| Twist Custom Capture (no probes) |
UH Internal
€268.90
each
External Academic €282.34 each |
||
| Twist Library Prep + Core Exome & RefSeq Capture, 1-plex | Inquire | ||
| Twist Library Prep + Core Exome & RefSeq Capture, 8-plex | Inquire | ||
| Twist Library Prep + FINWES Capture 8-plex | Inquire | ||
| Twist Library Prep + Pan Cancer Capture 8-plex | Inquire | ||
| Twist Library Prep, UDI indexes | Inquire | ||
| ► Illumina sequencing (FIMM) (23) | |||
| Name | Description | Price | |
| MiSeq (TCR) SE150 v3 run | Inquire | ||
| MiSeq Micro 300 run | Inquire | ||
| MiSeq Nano 300 run | Inquire | ||
| MiSeq Nano 500 run | Inquire | ||
| MiSeq PE150 v2 run | Inquire | ||
| MiSeq PE250 v2 run | Inquire | ||
| MiSeq PE300 v3 run | Inquire | ||
| MiSeq PE75 v3 run | Inquire | ||
| MiSeq SE50 v2 run | Inquire | ||
| NovaSeq S1 NS1-100 run | Inquire | ||
| NovaSeq S1 NS1-200 run | Inquire | ||
| NovaSeq S1 NS1-300 run | Inquire | ||
| NovaSeq S2 NS2-100 run | Inquire | ||
| NovaSeq S2 NS2-200 run | Inquire | ||
| NovaSeq S2 NS2-300 run | Inquire | ||
| NovaSeq S4 NS4-200 run | Inquire | ||
| NovaSeq S4 NS4-300 run | Inquire | ||
| NovaSeq SP NSP-100 run | Inquire | ||
| NovaSeq SP NSP-200 run | Inquire | ||
| NovaSeq SP NSP-300 run | Inquire | ||
| NovaSeq SP NSP-500 run | Inquire | ||
| NovaSeq XP 2-Lane Kit Divider | Inquire | ||
| NovaSeq Xp 4-Lane Kit Divider | Inquire | ||
| ► ABI3730xl assays (3) | |||
| Name | Description | Price | |
| Fragment analysis run, ABI 3730xl |
Service includes
Customer provides
|
Inquire | |
| Full service series, Sanger seq |
Service includes
Customer provides
|
Inquire | |
| Ready-to-run reaction, Sanger seq |
Service includes
Customer provides
|
Inquire | |
