Welcome!
| Hours | Location |
|
Monday - Friday 9:00h - 16:00h |
Biomedicum Helsinki 2 Tukholmankatu 8, Meilahti campus Helsinki, Finland |
FIMM Genomics provides open-access DNA and RNA sequencing and genotyping services for scientific community in Finland and abroad. Our primary focus is in medical genomics and transcriptomics. Most of our services include primary analysis of the data.
We will help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is implementing novel technologies and assays to match your needs. Our goal is provide state-of-the-art DNA sequencing services for the scientific community in Finland and abroad. Our services rely on experienced expert staff and market-leading NGS platforms NovaSeq6000 and MiSeq personal sequencer. These platforms enable a wide range of sequencing applications from massive genome scale analysis to rapid targeted experiments of selected genomic regions.
Sign in to browse NGS services and to submit a service or quote request.
To access targeted and genome-wide genotyping services see Genotyping Unit website.
FIMM Genomics is a non-profit academic core facility. We are part of HILIFE Genome Analysis Infrastructure and a member of Biocenter Finland Genome-wide methods network. FIMM is a member of EU-LIFE alliance.
Preferred way to login to FIMM Genomic Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.
When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.
|
Pekka Ellonen, Head of Sequencing laboratory |
Sari Hannula, NGS Project Manager Email: sari.hannula@helsinki.fi |
|
Pirkko Mattila, NGS transcriptomics & Head of single cell analytics |
Harri Kangas, NGS Service Expert Email: harri.kangas@helsinki.fi |
| Jenni Lahtela, Coordinator Single cell analytics Emai: jenni.lahtela@helsinki.fi |
Aino Palva, NGS Service Expert Email: aino.palva@helsinki.fi |
| Emma Saarinen, NGS Service Expert Email: emma.a.saarinen@helsinki.fi |
Tiina Hannunen, Amplicon Services Manager Email: tiina.hannunen@helsinki.fi |
| Anu Suoranta, NGS Service Expert Email: anu.z.suoranta@helsinki.fi |
Suvi Kyttänen, Capillary sequencing services Email: suvi.kyttanen@helsinki.fi |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Pekka Ellonen |
Head of Sequencing laboratory
|
+358504154481
|
pekka.ellonen@helsinki.fi
|
Biomedicum 2U FIMM
|
| Browse available services |
| ► Preprocessing (8) | |||
| Name | Description | Price | |
|---|---|---|---|
| BluePippin DNA size selection, 1 chip |
UH Internal
€113.24
each
External Academic €118.91 each |
||
| gDNA Ampure XP Purification, batch of 10 |
UH Internal
€56.18
each
External Academic €58.99 each |
||
| LabChip GX Genomic analysis, 24 samples |
UH Internal
€100.98
each
External Academic €106.03 each |
||
| LabChip GX Hisens analysis, 48 samples |
UH Internal
€98.39
each
External Academic €103.31 each |
||
| Library Quantification qPCR, up to 40 rxn |
UH Internal
€392.17
each
External Academic €411.78 each |
||
| Normalization of concentration / plate |
UH Internal
€84.92
each
External Academic €89.17 each |
||
| RNA Quality Control Bioanalyzer, 12 samples |
UH Internal
€81.68
each
External Academic €85.76 each |
||
| RNA Quality Control Caliper GX, 48 samples |
UH Internal
€118.42
each
External Academic €124.34 each |
||
| ► NGS Genome Analysis (19) | |||
| Name | Description | Price | |
| Accel 1S Plus Library Prep | Inquire | ||
| Accel Methyl-Seq, UDI indexes | Inquire | ||
| FINWES Capture |
Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture. |
UH Internal
€1,351.99
each
External Academic €1,419.59 each |
|
| NEBNext Ultra II Library Prep |
End-repair and ligation according to manufacturer protocol for full 96-well plates. 1/4 reaction. Requires already fragmented DNA. |
Inquire | |
| Nextera Flex Library Prep 1/4 rxn |
Illumina DNA Prep Tagmentation, <48 samples |
Inquire | |
| Nextera Flex Library Prep HT 1/4 rxn |
Illumina DNA Prep Tagmentation, >48 samples |
Inquire | |
| NexteraFlexForExome, 12-plex | Inquire | ||
| Pan Cancer Capture |
UH Internal
€810.00
each
External Academic €850.00 each |
||
| PCR Amplicon setup |
Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS. |
UH Internal
€71.14
each
|
|
| PCR amplification, series |
Sample batches of ≥8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service. |
Inquire | |
| PCR amplification, singles |
Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service |
Inquire | |
| QIAseq cfDNA Library Prep | Inquire | ||
| Twist Comprehensive Exome Capture |
Old name Twist Core Exome + Refseq |
Inquire | |
| Twist Custom Capture (no probes) |
UH Internal
€268.90
each
External Academic €282.34 each |
||
| Twist Library Prep + Comprehensive Exome Capture, 1-plex |
Old name Twist Core Exome + Refseq |
Inquire | |
| Twist Library Prep + Comprehensive Exome Capture, 8-plex |
Old name Twist Core Exome + Refseq |
Inquire | |
| Twist Library Prep + FINWES Capture 8-plex |
57MB target |
Inquire | |
| Twist Library Prep + Pan Cancer Capture 8-plex | Inquire | ||
| Twist Library Prep, UDI indexes |
UH Internal
€89.24
each
External Academic €93.70 each |
||
| ► Illumina sequencing (FIMM) (23) | |||
| Name | Description | Price | |
| MiSeq (TCR) SE150 v3 run | Inquire | ||
| MiSeq Micro 300 run | Inquire | ||
| MiSeq Nano 300 run | Inquire | ||
| MiSeq Nano 500 run | Inquire | ||
| MiSeq PE150 v2 run | Inquire | ||
| MiSeq PE250 v2 run | Inquire | ||
| MiSeq PE300 v3 run | Inquire | ||
| MiSeq PE75 v3 run | Inquire | ||
| MiSeq SE50 v2 run | Inquire | ||
| NovaSeq S1 NS1-100 run |
v1.5 chemistry kit Estimated run yield 167 Gb / 1600 M PF Clusters |
Inquire | |
| NovaSeq S1 NS1-200 run |
v1.5 chemistry kit Estimated run yield 333 Gb / 1600 M PF Clusters |
Inquire | |
| NovaSeq S1 NS1-300 run |
v1.5 chemistry kit Estimated run yield 500 Gb / 1600 M PF Clusters |
Inquire | |
| NovaSeq S2 NS2-100 run |
v1.5 chemistry kit Estimated run yield 417 Gb / 4100 M PF Clusters |
Inquire | |
| NovaSeq S2 NS2-200 run |
v1.5 chemistry kit Estimated run yield 833 Gb / 4100 M PF Clusters |
Inquire | |
| NovaSeq S2 NS2-300 run |
v1.5 chemistry kit Estimated run yield 1250 Gb / 4100 M PF Clusters |
Inquire | |
| NovaSeq S4 NS4-200 run |
v1.5 chemistry kit Estimated run yield 2000 Gb / 10000 M PF Clusters |
Inquire | |
| NovaSeq S4 NS4-300 run |
v1.5 chemistry kit Estimated run yield 3000 Gb / 10000 M PF Clusters |
Inquire | |
| NovaSeq SP NSP-100 run |
v1.5 chemistry kit Estimated run yield 80 Gb / 800 M PF Clusters |
Inquire | |
| NovaSeq SP NSP-200 run |
v1.5 chemistry kit Estimated run yield 167 Gb / 800 M PF Clusters |
Inquire | |
| NovaSeq SP NSP-300 run |
v1.5 chemistry kit Estimated run yield 250 Gb / 800 M PF Clusters |
Inquire | |
| NovaSeq SP NSP-500 run |
v1.5 chemistry kit Run yield estimation 400 Gb / 800 M PF Clusters |
Inquire | |
| NovaSeq XP 2-Lane Kit Divider |
v1.5 chemistry kit Can be used in SP/S1/S2 flow cells |
Inquire | |
| NovaSeq Xp 4-Lane Kit Divider |
v1.5 chemistry kit Can be used in S4 flow cell |
Inquire | |
| ► ABI3730xl assays (3) | |||
| Name | Description | Price | |
| Fragment analysis run, ABI 3730xl |
Service includes
Customer provides
|
Inquire | |
| Full service series, Sanger seq |
Service includes
Customer provides
|
Inquire | |
| Ready-to-run reaction, Sanger seq |
Service includes
Customer provides
|
Inquire | |
