Welcome!
| Hours | Location |
|
Monday - Friday 9:00h - 16:00h |
Biomedicum Helsinki 2 Tukholmankatu 8, Meilahti campus Helsinki, Finland |
FIMM Genomics provides open-access DNA and RNA sequencing and genotyping services for scientific community in Finland and abroad. Our primary focus is in medical genomics and transcriptomics. Most of our services include primary analysis of the data.
We will help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is implementing novel technologies and assays to match your needs. Our goal is provide state-of-the-art DNA sequencing services for the scientific community in Finland and abroad. Our services rely on experienced expert staff and market-leading NGS platforms NovaSeq6000 and MiSeq personal sequencer. These platforms enable a wide range of sequencing applications from massive genome scale analysis to rapid targeted experiments of selected genomic regions.
Sign in to browse NGS services and to submit a service or quote request.
To access targeted and genome-wide genotyping services see Genotyping Unit website.
FIMM Genomics is a non-profit academic core facility. We are part of HILIFE Genome Analysis Infrastructure and a member of Biocenter Finland Genome-wide methods network. FIMM is a member of EU-LIFE alliance.
Preferred way to login to FIMM Genomic Core iLAB is to use HAKA authentication. HAKA is the identity federation for the Finnish univerities and research institutes. HAKA is operated by CSC.
When your host institution is not a member of HAKA identity federation click 'Register' and we'll create you the credentials for accessing iLAB Core Facility management system. These iLAB credentials are separate from your host organization.
|
Sari Hannula, NGS Project Manager |
Aino Palva, NGS Service Expert Email: aino.palva@helsinki.fi |
|
Pirkko Mattila, NGS transcriptomics & Head of Single Cell Analytics |
Tiina Hannunen, Amplicon Services Manager Email: tiina.hannunen@helsinki.fi |
| Emma Saarinen, Single Cell Analytics Service Expert Email: emma.a.saarinen@helsinki.fi |
Minna Tuominen, Capillary sequencing services Email: minna.m.tuominen@helsinki.fi |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Sari Hannula |
NGS Project Manager
|
sari.hannula@helsinki.fi
|
Biomedicum 2U FIMM
|
| Browse available services |
| ► Preprocessing (7) | |||
| Name | Description | Price | |
|---|---|---|---|
| BluePippin DNA size selection |
UH Internal
€393.15
each
External Academic €434.20 each |
||
| dsDNA quantification max 88samples | Inquire | ||
| Library Quantification qPCR |
UH Internal
€575.32
each
External Academic €634.59 each |
||
| Normalization of concentration / plate |
UH Internal
€639.20
each
External Academic €706.58 each |
||
| Pooling 96x | Inquire | ||
| RNA Quality Control Bioanalyzer, 12 samples |
UH Internal
€215.63
each
External Academic €249.13 each |
||
| RNA Quality Control Caliper GX, 48 samples |
UH Internal
€277.90
each
External Academic €320.74 each |
||
| ► NGS Genome Analysis (32) | |||
| Name | Description | Price | |
| FINWES Capture |
Multiplexed target enrichment assay targeting 57Mb of genomic regions. Up to 8 or even 16 libraries per capture. |
UH Internal
€2,444.57
each
External Academic €2,691.26 each |
|
| Illumina DNA prep (Nextera) 1/4 for 96 samples |
UH Internal
€4,909.05
each
External Academic €5,422.25 each |
||
| Illumina PCR free 1 sample |
Library prep kit for human WGS |
Inquire | |
| Illumina PCR free 24 samples | Inquire | ||
| Illumina PCR free 96 samples | Inquire | ||
| NEBNext EM-seq Library prep 1 sample |
Library preparation using NEBNext Enzymatic Methyl-seq kit |
UH Internal
€163.25
each
External Academic €180.13 each |
|
| NEBNext EM-seq Library prep 24 samples | Inquire | ||
| NEBNext EM-seq Library prep 96 samples | Inquire | ||
| NEBNext Ultra II Library Prep 1/4 for 96 samples |
Library preparation using NEBNEext Ultra II Library Prep kit |
UH Internal
€6,522.03
each
External Academic €7,203.09 each |
|
| Pan Cancer Capture |
UH Internal
€1,398.57
each
External Academic €1,540.66 each |
||
| PCR Amplicon setup |
Desing and optimization of one pair of primers. Primers may or may not have NGS overhangs for NGS. |
UH Internal
€69.52
each
|
|
| PCR amplification, series |
Sample batches of >8 samples per PCR master mix (delivery in 8-well strips/96-well plate). Price per reaction. Service includes PCR amplification using pre-optimized conditions by user or in 'PCR Amplicon setup' service. |
Inquire | |
| PCR amplification, singles |
Sample batches of less than 8 samples per PCR master mix (delivery in tubes/8-well strip/plate). Price per reaction. Includes PCR amplification using pre-optimized conditions delivered by user or optimized using 'PCR amplicon setup' service |
Inquire | |
| QIAseq cfDNA Library Prep | Inquire | ||
| QIAseq cfDNA Library Prep 21 samples | Inquire | ||
| Twist cfDNA Library Prep 1 samples | Inquire | ||
| Twist Custom Capture (no probes) |
UH Internal
€644.90
each
External Academic €711.62 each |
||
| Twist Fast Hyb Alliance Pan-Cancer Methylation Capture |
Fast Hyb Alliance Pan-Cancer Methylation Capture of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction. |
UH Internal
€1,224.71
each
External Academic €1,349.41 each |
|
| Twist Fast Hyb Custom Capture (no probes) |
Target enrichment of Illumina compatible, indexed paired-end library using Twist Fast Hyb Enrichment kits. Only available for genomic libraries processed at FIMM. Multiple samples (typically 8-16) can be pooled per reaction. |
UH Internal
€703.80
each
External Academic €776.41 each |
|
| Twist Library Prep 1 sample |
UH Internal
€114.97
each
External Academic €126.74 each |
||
| Twist Library Prep 96 samples |
Library preparation using Twist Library Preparation EF Kit 2.0 |
UH Internal
€7,273.33
each
External Academic €8,021.65 each |
|
| Twist PCR free 1 sample | Inquire | ||
| Twist PCR free 16 samples | Inquire | ||
| Twist PCR free 96 samples | Inquire | ||
| Twist UHT LP 192 samples | Inquire | ||
| Twist UHT LP+Enrichm 192x (no probe) | Inquire | ||
| TwistExome2.0plusCompSpikeCapture 12x | Inquire | ||
| TwistExome2.0plusCompSpikeCapture 1x | Inquire | ||
| TwistExome2.0plusCompSpikeCapture 24x | Inquire | ||
| Watchmaker PCR free 1 sample | Inquire | ||
| Watchmaker PCR free 24 samples | Inquire | ||
| Watchmaker PCR free 96 samples | Inquire | ||
| ► NGS Transcriptome Analysis (13) | |||
| Name | Description | Price | |
| Illumina Stranded mRNA |
UH Internal
€128.32
each
External Academic €141.42 each |
||
| Illumina Stranded mRNA Prep 96x | Inquire | ||
| Illumina Stranded Total RNA Prep |
UH Internal
€178.84
each
External Academic €196.99 each |
||
| Illumina Stranded Total RNA Prep 96x | Inquire | ||
| Lexogen small RNA-Seq |
UH Internal
€239.34
each
External Academic €263.54 each |
||
| Pacbio Kinnex full-length RNA 4 samples | Inquire | ||
| Pacbio Kinnex full-length RNA 8 samples | Inquire | ||
| Quantabio sparQ RNA-Seq HMR prep 1x | Inquire | ||
| Quantabio sparQ RNA-Seq HMR prep 96x | Inquire | ||
| QuantSeq 3'-mRNA Seq Library Prep 1x |
UH Internal
€122.60
each
External Academic €135.13 each |
||
| QuantSeq 3'-mRNA Seq Library Prep 96x | Inquire | ||
| SMART-Seq mRNA Library Prep 96x | Inquire | ||
| SMART-Seq mRNA Prep 1x |
UH Internal
€191.61
each
External Academic €211.04 each |
||
| ► DNA target enrichment (1) | |||
| Name | Description | Price | |
| Twist Custom Capture 12x (no probes) | Inquire | ||
| ► Illumina sequencing (FIMM) (35) | |||
| Name | Description | Price | |
| MiSeq Micro 300 run |
UH Internal
€863.64
each
External Academic €951.17 each |
||
| MiSeq Nano 300 run |
UH Internal
€668.28
each
External Academic €736.27 each |
||
| MiSeq Nano 500 run |
UH Internal
€744.36
each
External Academic €819.96 each |
||
| MiSeq PE150 v2 run |
UH Internal
€2,294.00
each
External Academic €2,528.07 each |
||
| MiSeq PE250 v2 run |
UH Internal
€2,467.40
each
External Academic €2,718.81 each |
||
| MiSeq PE300 v3 run |
UH Internal
€2,936.00
each
External Academic €3,234.27 each |
||
| MiSeq PE75 v3 run |
UH Internal
€2,111.52
each
External Academic €2,327.34 each |
||
| MiSeq SE50 v2 run |
UH Internal
€1,990.34
each
External Academic €2,194.04 each |
||
| NovaSeq S1 NS1-100 run |
v1.5 chemistry kit Estimated run yield 134-167 Gb / 1300-1600 M PF Clusters |
UH Internal
€6,197.95
each
External Academic €6,824.43 each |
|
| NovaSeq S1 NS1-200 run |
v1.5 chemistry kit Estimated run yield 266-333 Gb / 1300-1600 M PF Clusters |
UH Internal
€7,465.35
each
External Academic €8,218.57 each |
|
| NovaSeq S1 NS1-300 run |
v1.5 chemistry kit Estimated run yield 400-500 Gb / 1300-1600 M PF Clusters |
UH Internal
€8,012.15
each
External Academic €8,820.05 each |
|
| NovaSeq S2 NS2-100 run |
v1.5 chemistry kit Estimated run yield 333-417 Gb / 3300-4100 M PF Clusters |
UH Internal
€10,373.95
each
External Academic €11,418.03 each |
|
| NovaSeq S2 NS2-200 run |
v1.5 chemistry kit Estimated run yield 667-833 Gb / 3300-4100 M PF Clusters |
UH Internal
€12,639.35
each
External Academic €13,909.97 each |
|
| NovaSeq S2 NS2-300 run |
v1.5 chemistry kit Estimated run yield 1000-1250 Gb / 3300-4100 M PF Clusters |
UH Internal
€13,525.15
each
External Academic €14,884.35 each |
|
| NovaSeq S4 NS4-200 run |
v1.5 chemistry kit Estimated run yield 1600-2000 Gb / 8000-10000 M PF Clusters |
UH Internal
€17,383.15
each
External Academic €19,128.15 each |
|
| NovaSeq S4 NS4-300 run |
v1.5 chemistry kit Estimated run yield 2400-3000 Gb / 8000-10000 M PF Clusters |
UH Internal
€19,501.15
each
External Academic €21,457.95 each |
|
| NovaSeq S4 NS4-35 run |
v1.5 chemistry kit Estimated run yield 280-350 Gb / 8000-10000 M PF Clusters |
UH Internal
€13,311.15
each
External Academic €14,648.95 each |
|
| NovaSeq SP NSP-100 run |
v1.5 chemistry kit Estimated run yield 65-80 Gb / 650-800 M PF Clusters |
UH Internal
€4,065.15
each
External Academic €4,478.35 each |
|
| NovaSeq SP NSP-200 run |
v1.5 chemistry kit Estimated run yield 134-167 Gb / 650-800 M PF Clusters |
UH Internal
€4,880.95
each
External Academic €5,375.73 each |
|
| NovaSeq SP NSP-300 run |
v1.5 chemistry kit Estimated run yield 200-250 Gb / 650-800 M PF Clusters |
UH Internal
€5,213.15
each
External Academic €5,741.15 each |
|
| NovaSeq SP NSP-500 run |
v1.5 chemistry kit Run yield estimation 325-400 Gb / 650-800 M PF Clusters |
UH Internal
€6,711.15
each
External Academic €7,388.95 each |
|
| NovaSeq X 1.5B 100c run | Inquire | ||
| NovaSeq X 1.5B 200c run | Inquire | ||
| NovaSeq X 1.5B 300c run | Inquire | ||
| NovaSeq X 10B 100c run | Inquire | ||
| NovaSeq X 10B 200c run | Inquire | ||
| NovaSeq X 10B 300c run | Inquire | ||
| NovaSeq X 25B 100c run | Inquire | ||
| NovaSeq X 25B 200c lane | Inquire | ||
| NovaSeq X 25B 200c run | Inquire | ||
| NovaSeq X 25B 300c lane | Inquire | ||
| NovaSeq X 25B 300c run | Inquire | ||
| NovaSeq X custom primer buffer | Inquire | ||
| NovaSeq XP 2-Lane Kit Divider |
v1.5 chemistry kit Can be used in SP/S1/S2 flow cells |
UH Internal
€358.00
each
External Academic €393.80 each |
|
| NovaSeq Xp 4-Lane Kit Divider |
v1.5 chemistry kit Can be used in S4 flow cell |
UH Internal
€718.00
each
External Academic €789.80 each |
|
| ► ABI3730xl assays (3) | |||
| Name | Description | Price | |
| Fragment analysis run, ABI 3730xl |
Service includes
Customer provides
|
Inquire | |
| Full service series, Sanger seq |
Service includes
Customer provides
|
Inquire | |
| Ready-to-run reaction, Sanger seq |
Service includes
Customer provides
|
Inquire | |
| ► Nanopore (1) | |||
| Name | Description | Price | |
| Megaruptor 3 Shearing | Inquire | ||
